Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015801374.1_cds_XP_016474732.1_6647
CDS Infomation

[gene=LOC107796462] [db_xref=GeneID:107796462] [protein=small RNA degrading nuclease 5 isoform X2] [protein_id=XP_016474732.1] [location=complement(join(37534..37657,39305..39600,39694..39881,41442..41706,41869..41929,44026..44081,45322..45381,46305..46375,46464..46592,47849..47961,48088..48221,50920..51021))] [gbkey=CDS]
Sequence

ATGAGTTGCCAGAACAGTAAAACAGAAGAAACGGCCGACGAGCAACACAATACCAGCAAA
GACCCTAAACACAAACCCTTCTTTGACGTTTACGGCCCTCAGAACAAGCCTTTGATCCCT
AAAGTGGTTATGCTGTATGTTCCTGGCCTTGATGCCGCTCTATATTTGTCACAGTCTAAA
GTGCTCAAAGGTTTCAAAGAATGCTGTGGTATTCCGAGGCCAGTTTTAGCTCTGAGCTGT
GTATCAGATGGAAATCAGACAATAGATGCACTCCTTACGTACAAATCAAAGAGGAAAAGG
AAAGAAGCTGAGCACATTTCACCAATAAACACCGAGCCTTCTGAACAAGGTGCTGAGACT
CCCACTATGGAGCCTCTATCTTTTGTTGACCTCAAAAAGGATATACCATTTCCCATCAGT
TATTACACACTTACGGATAAGGAACTAGAAGAAAATGGATACTGTTATGACCAACCAGAA
TTTCTTTCGACGCTCCCTGCTCCTTCAGGAACATCTCCACATGAAATTTTGGCCCTTGAC
TGCGAGATGTGTATTACAAGGGAAGGCTTTGAGCTTACCAGAGTGACACTAGTGGATGTT
AAAGGACAGGTTCTGCTGGATAAATTGGTCAAACCATCAAACAACATTGTTGACTACAAT
ACTAGGTATAGTGGAATTACTTGTCAGATGTTGGAGGATGTGACTACCACTCTTAAAGAT
ATCCAGGAGGAGTTCTTGAAACTGGTTTACAAGGAGACCATTCTGGTTGGGCATTCCTTG
GAAAATGATTTGTTAGCCCTGAAGATCATTCATAATTTGGTAATAGATACTGCTGTGTTG
TACAAACATCCAAGAGGATCCTACAAAGCTGCTCTTCGCGTTCTGAGCAGAAAATTTCTC
GGCAGGGAGATACAGGACTCGGGCAATGGGCATGACAGCATTGAAGATGCAAAAGCTACA
CTGGAACTAGCACTACTAAAAATAAAAAATGGGCCTGATTTTGGTATACCTCAATGTCAA
CGATTACTGCGGCAGAAGCTTCTTTCAGTTCTGAGTGACTCTGGCAAAAAATCCTCAATC
ATTGATCATATATCCATAGTGAGGAGATATGCTGCTGAATTGTCCCATACAATTCCAGTA
TCATCTGATGATGAAGCACTTTCAAAAGCCAACAAAGAGGTCAGAAATGATAAAGTACAG
TTTATCTGGACGCAATTTGCAGAGTTATATGCATATCTCAGGAAGCAAGCAGATGACCCG
GAGAAGCTAAATAAAAAGTTGGCAGAAATGATAGCATTGCTGACGTGTGAGAAAAAGTCT
ACTAGCAGAAGAAATGTCAAATATGATGTCACCCCTGAACTGAAGGACATTCTGAGCCAC
ATGAATCGTAGAGTCAGGAGCATTTACTCCAATCTTCCTCTAAATGCAATGCTTATTATT
TGCACTGGTCATGGAGACACTGCAATAGTTCAAAGAGTGAGGAAAATCTTGTCGGAGCAG
ACGGATGCCTCAATGTCCCGTGAGAATATTGTTAAAGTCTTAGAAGAGTTGCAGGCACAA
GCTGAAGTTGGTTTGTGCTTTGTAGGTGTCAAACATTGA

Peptide Sequence

PEP ID

XP_016474732.1
PEP Infomation

PREDICTED: small RNA degrading nuclease 5 isoform X2 [Nicotiana tabacum]
Sequence

MSCQNSKTEETADEQHNTSKDPKHKPFFDVYGPQNKPLIPKVVMLYVPGLDAALYLSQSK
VLKGFKECCGIPRPVLALSCVSDGNQTIDALLTYKSKRKRKEAEHISPINTEPSEQGAET
PTMEPLSFVDLKKDIPFPISYYTLTDKELEENGYCYDQPEFLSTLPAPSGTSPHEILALD
CEMCITREGFELTRVTLVDVKGQVLLDKLVKPSNNIVDYNTRYSGITCQMLEDVTTTLKD
IQEEFLKLVYKETILVGHSLENDLLALKIIHNLVIDTAVLYKHPRGSYKAALRVLSRKFL
GREIQDSGNGHDSIEDAKATLELALLKIKNGPDFGIPQCQRLLRQKLLSVLSDSGKKSSI
IDHISIVRRYAAELSHTIPVSSDDEALSKANKEVRNDKVQFIWTQFAELYAYLRKQADDP
EKLNKKLAEMIALLTCEKKSTSRRNVKYDVTPELKDILSHMNRRVRSIYSNLPLNAMLII
CTGHGDTAIVQRVRKILSEQTDASMSRENIVKVLEELQAQAEVGLCFVGVKH

Transcript Sequence

Gene sequence data has not been registered.